PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00658g00088.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 700aa    MW: 77932.6 Da    PI: 8.2613
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00658g00088.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07591640147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Peaxi162Scf00658g00088.1 591 RRPFSVSEVEALVEAVEQLGTGRWRDVKMRAFdsaDHRTYVDLKDKWKTL 640
                               678999********************9766668**9***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.905.8E-4386465No hitNo description
SuperFamilySSF542361.49E-6393475IPR029071Ubiquitin-related domain
PROSITE profilePS500538.764397467IPR000626Ubiquitin domain
CDDcd017690.00783401467No hitNo description
Gene3DG3DSA:1.10.10.606.1E-10583642IPR009057Homeodomain-like
PROSITE profilePS5129416.441586645IPR017930Myb domain
SMARTSM007175.4E-8590643IPR001005SANT/Myb domain
CDDcd116603.46E-16592642No hitNo description
SuperFamilySSF466891.28E-15592673IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MVSKKRLNCG FTGYQIPAIP KAPRSARKRR PCKKLDDDQI CAFELLAAVA GKLLLESESS  60
ASSNVGALEG KDDPADCRDS SKHGVEDDKA VKSECLDQGS CVESAYIPEA ADPEQNSKNG  120
SSKPYHAENK SSLEHSSTII CSDSLTKDWS DVKLENCKEV NKYGNLRNKM EDESLNLDDP  180
CQIRTVEGTR KQLDDDSKQD KLTVVNNCSV KDPIEKIVNN SNLINSDSSV QLPLYRDKVP  240
CASFVKSRNN VKLGIRDDDE NYFGCYGYST KIRTIRSTSR NTYRRMRRML TSRHWKVAPK  300
LKDCERSYSN DGMKSFCRNR KSMHANERHR LEIPSKRRKL CDHSFAVTYD QEASCESISN  360
SPENGIKKDM ISSPGIQHKG AGASASARNH QKKDPNVKFS IKSFKVPELY IEVPETETIG  420
SLKKTVMEAV TAILGSGIRV GMVLQGKKVR EDNKTLQQAG ISKNGNLDTL GFTLEPSFTN  480
VPLSLPPKDD TPASASYITD QELSRHPPSP VLDSGPTNAL SRPPETKLDK HDESNSELEM  540
SPNNPTDQSA DEAVLDCKAL AIVPPVNEEA VAVVSVNHKS RRCELSQRRT RRPFSVSEVE  600
ALVEAVEQLG TGRWRDVKMR AFDSADHRTY VDLKDKWKTL VHTASIAPQQ RRGEPVPQEL  660
LDRVLAAHSY WSQHQVKQHG KQEADQPLKI VDAQVQNVGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-655767002121Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785792.10.0PREDICTED: telomere repeat-binding protein 3-like isoform X1
TrEMBLQ84ZU40.0Q84ZU4_NICGU; Telomere binding protein TBP1
STRINGSolyc05g054410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.17e-93TRF-like 2